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1. Introduction In 1973, Bill Jorgensen and Lionel Salem
published a small paperback that was to become the
constant companion of many physical organic chemists for
years to come. The Organic Chemist's Book of Orbitals
was delightful in its simplicity and clarity of
presentation of the concepts of group orbitals and
qualitative molecular orbital theory in general. For many
of us, it was symbolic of a chemical era. Sadly, it went
out of print far too early. Now, 25 years later, the
concepts presented by Jorgensen and Salem are as valid as
ever and have advanced to become the major
interpretational tool of organic and inorganic chemists.
However, the technical possibilities for presenting this
material have changed beyond recognition. We have
therefore revived the idea of The Organic Chemist's
Book of Orbitals and given it a new form that allows
the reader (or is the "reader" now the
"user"?) to rotate and zoom the molecular
orbital (MO) plots, which are stored as three-dimensional
objects. As in the original, the MO-plots are preceded by
a short text section on the principles of qualitative
MO-theory, although we have also added a short
introduction to elementary symmetry considerations in
order for the reader to be able to understand the
symmetry designations of the individual orbitals. We have
also added MO-plots for some of the more important
organic compounds that are commonly used as ligands for
transition metal complexes. Chapter 2 presents the principles of the Linear
Combination of Atomic Orbitals
(LCAO) approximation. This is the
dominant approximation of qualitative (and 99% of
quantitative) MO-theory. It has become so established
that we very often lose sight of the fact that it is an
approximation and there have been many controversial
discussions about methods for analysing the properties of
individual atoms within molecules over the last 25 years.
Chapter 2 also describes the effects of the
electronegativities of the individual elements and
introduces the Walsh diagram approach to analysing the
structures of small moelcules and fragments. Chapter 3 extends these concepts to larger
molecules. The MOs of one-heavy-atom fragments can be
used as group orbitals to build up the MOs of larger
molecules. This concept of group orbitals often provides
the basis for the interpretation of MO-effects in larger
molecules. Chapter 3 then moves on to treat p-systems, which are involved in much of the
reactivity that we seek to explain using MO-concepts, and
hyperconjugation. Chapter 4 extends the qualitative
MO-concepts to reactions and gives a very short treatment
of the Woodward-Hoffman rules. The treatment of concerted
electrocyclic reactions, cycloadditions and sigmatropic
rearrangements provided the impetus for the adoption of
MO-treatments, rather than the more traditional resonance
theory, in organic chemistry. We now have a rather
unsatisfactory situation in which elementary mechanistic
organic chemistry is treated using valence-bond and
resonance arguments (because they work and are easy to
explain) but that for the above processes we change to
MO-theory. There have been many heroic attempts to
resolve this dichotomy in organic textbooks in the last
20 years, but an ideal solution remains elusive. Chapter 5 gives a short introduction to
molecular symmetry, symmetry elements, point groups,
Mulliken symbols and character tables. It is not intended
to provide a complete treatment of the subject, but
rather to help the non-specialist understand the symbols
and perhaps to prepare students for more specialised
textbooks on symmetry. The final section of this chapter
treats degenerate MOs. The MO-plots for these orbitals
used moelcular structures that were slightly distorted
from the full molecular symmetry so that the degenerate
MOs appear in their usual forms with nodal planes
corresponding to molecular mirror planes. It is, however,
important to realise that real MO-calculations using the
full symmetry may give different, equivalent sets of MOs.
Chapter 6 contains the MO-plots themselves.
The printed version simply contains the table of the
molecules available with their point groups and molecular
formulae. In the CD-ROM version, this table is linked to
the MO-plots themselves, which are available as Virtual
Reality Markup Language
(VRML) objects that can be rotated,
zoomed and printed in the desired orientation. It may be
necessary to install the appropriate VRML-viewer from the
CD if your Web browser is not already equipped for VRML.
The MO-plots themselves were all produced using AM1
semiempirical MO-theory at the AM1-optimised geometries.
Generally, the differences between orbitals plotted at
this level of theory and those given by high level large
basis set ab initio calculations are hardly
visible, so that we have chosen the fast, efficient
semiempirical method that has become so popular for large
organic molecules. The geometries may, however sometimes
deviate significantly from those given by higher levels
of theory. We intend this edition to be the beginning of a continuous development that will take advantage of new technologies to provide more interactive multimedia features in the text and additional ways for the user to interact with the MO-plots. Time will tell whether the format that we have chosen will survive long into the future, but we have tried to make the CD-ROM as platform-independent as possible so that it can be used by PC, Mac and Unix users equally well without the need to buy additional software. |